À propos de Jelle
Néerlandais
Bilingue ou natif
Allemand
Capacité professionnelle complète
Anglais
Capacité professionnelle complète
Français
Notions
Expériences
- Freelance for EMBLFREELANCE SOFTWARE DEVELOPERjanvier 2024 - décembre 2025 (1 an et 11 mois)
- LabID‑PROV (OSCARS, Horizon Europe grant No. 101129751): extending LabID to track and share data provenance with RO‑Crate, in line with FAIR principles
- Modeling workflows and workflow runs in LabID and linking to Life Science research infrastructure tools, integrating WorkflowHub and Galaxy
- Earlier contract: implemented S3 cloud storage support for LabID datasets: user‑supplied S3 credentials, URL‑referenced data and the full file management lifecycle (upload, download, deletion, sharing, metadata), compatible with EMBL and AWS S3
- Designed the new "Workflow Run" assay type capturing input datasets, workflow version, parameters and execution configuration from Nextflow, Snakemake and Galaxy; extended the core assay model to accept datasets (not only samples) as inputs
- EMBLBIOINFORMATiCIAN, FULL STACK DEVELOPER AND TECHNICAL LEADoctobre 2014 - septembre 2023 (8 ans et 11 mois)Heidelberg, Allemagne
- Lead developer of LabID lab data management and Electronic Lab Notebook platform, used by 200+ employees; led feature and technical‑ requirement decisions and ran development and production deployments via CI/CD on EMBL's managed Kubernetes cluster
- Production‑hardened and maintained EMBL GitLab: configuration in version control, automated backups, Docker registry and LFS; around 2280 users, 65 groups and 3600+ projects with no major downtime or security incidents
- Initiated and launched EMBL Chat (Mattermost) in 2017 as a data‑protected alternative to externally hosted Slack, growing past 1000 registered users
- Provided and maintained compute services (Galaxy, RStudio) and supported and trained EMBL staff
- Institute for Translational Oncology (TRON)BIOINFORMATICIANjanvier 2011 - septembre 2014 (3 ans et 8 mois)Mainz, Allemagne
- Maintaining and customizing a Galaxy installation for R&D and as a LIMS for the NGS core facility
- Development of the TRON Cell Line Portal that integrates RNA‑Seq expression, HLA and mutation data
- Managing the HPC infrastructure for the NGS and bioinformatics department, including purchasing, configuration and maintenance
- Supervising students, projects include the development of Galaxy LIMS, a RNA‑seq pipeline and a platform for sample reports within the DJango web framework
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Formations
- BACHELOR OF APPLiED SCiENCE, BiOiNFORMATiCSHanzehogeschool Groningen / Hanze University ofApplied Sciences2008BACHELOR OF APPLiED SCiENCE, BiOiNFORMATiCS
- SENiOR GENERAL SECONDARY EDUCATiON (HAVO) ‑Emelwerda College2003SENiOR GENERAL SECONDARY EDUCATiON (HAVO) ‑